BART: Publications
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Figure: Simulated MRI images.
Reproducible Research
This is a list of research paper which can be reproduced using BART.
- Nick Scholand, Xiaoqing Wang, Volkert Roeloffs, Sebastian Rosenzweig, Martin Uecker. Quantitative Magnetic Resonance Imaging by Nonlinear Inversion of the Bloch Equations. Magnetic Resonance in Medicine 90:520-538 (2023) Github repository
- Xiaoqing Wang, Sebastian Rosenzweig, Volkert Roeloffs, Moritz Blumenthal, Zhengguo Tan, Nick Scholand, H. Christian M. Holme, Christina Unterberg-Buchwald, Rabea Hinkel, Martin Uecker. Free-Breathing Myocardial T1 Mapping using Inversion-Recovery Radial FLASH and Motion-Resolved Model-Based Reconstruction. Magnetic Resonance in Medicine 89:1368-1384 (2023) GitHub repository
- Moritz Blumenthal, Guanxiong Luo, Martin Schilling, H. Christian M. Holme, Martin Uecker. Deep, Deep Learning with BART. Magnetic Resonance in Medicine 89:678-693 (2023) GitHub repository
- Xiaoqing Wang, Zhengguo Tan, Nick Scholand, Volkert Roeloffs, Martin Uecker. Physics-based Reconstruction Methods for Magnetic Resonance Imaging. Philos. Trans. R. Soc. A. 379:20200196 (2021) GitHub repository
- Xiaoqing Wang, Sebastian Rosenzweig, Nick Scholand, H. Christian M. Holme, Martin Uecker. Model-based Reconstruction for Simultaneous Multi-slice T1 Mapping using Single-shot Inversion-recovery Radial FLASH. Magnetic Resonance in Medicine 85:1258-1271 (2021) GitHub repository
- Sebastian Rosenzweig, Nick Scholand, H. Christian M. Holme, Martin Uecker. Cardiac and Respiratory Self-Gating in Radial MRI using an Adapted Singular Spectrum Analysis (SSA-FARY). IEEE Transactions on Medical Imaging ;39:3029-3041 (2020) GitHub repository
- Xiaoqing Wang, Florian Kohler, Christina Unterberg-Buchwald, Joachim Lotz, Jens Frahm, Martin Uecker. Model-based myocardial T1 mapping with sparsity constraints using single-shot inversion-recovery radial FLASH cardiovascular magnetic resonance. Journal of Cardiovascular Magnetic Resonance 21:60 (2019) GitHub repository
- Sebastian Rosenzweig, H. Christian M. Holme, Martin Uecker. Simple Auto-Calibrated Gradient Delay Estimation From Few Spokes Using Radial Intersections (RING). Magnetic Resonance in Medicine 81:1898-1906 (2019) GitHub repository
- H. Christian M. Holme, Sebastian Rosenzweig, Frank Ong, Robin N. Wilke, Michael Lustig, Martin Uecker. ENLIVE: An Efficient Nonlinear Method for Calibrationless and Robust Parallel Imaging. Scientific Reports 9:3034 (2019) GitHub repository
- Sebastian Rosenzweig, H. Christian M. Holme, Robin N. Wilke, Dirk Voit, Jens Frahm, Martin Uecker. Simultaneous Multi-Slice Reconstruction Using Regularized Nonlinear Inversion: SMS-NLINV. Magnetic Resonance in Medicine 79:2057-2066 (2018) GitHub repository
- Martin Uecker and Michael Lustig. Estimating Absolute-Phase Maps Using ESPIRiT and Virtual Conjugate Coils. Magnetic Resonance in Medicine 77:1201-1207 (2017) GitHub repository
References
A a generic reference (all versions): BART Toolbox for Computational Magnetic Resonance Imaging, DOI: 10.5281/zenodo.592960
- Moritz Blumenthal and Martin Uecker. Deep, Deep Learning with BART. ISMRM Annual Meeting 2021, In Proc. Intl. Soc. Mag. Reson. Med. 29;1754 (2021)
- Guanxiong Luo, Moritz Blumenthal, Martin Uecker. Using data-driven image priors for image reconstruction with BART. ISMRM Annual Meeting 2021, In Proc. Intl. Soc. Mag. Reson. Med. 29;1756 (2021)
- H. Christian M. Holme and Martin Uecker. Reproducibility meets Software Testing: Automatic Tests of Reproducible Publications Using BART. ISMRM Annual Meeting 2021, In Proc. Intl. Soc. Mag. Reson. Med. 29;3768 (2021)
- Martin Uecker. Machine Learning Using the BART Toolbox - Implementation of a Deep Convolutional Neural Network for Denoising. Joint Annual Meeting ISMRM-ESMRMB, Paris 2018, In Proc. Intl. Soc. Mag. Reson. Med. 26;2802
- Jonathan I Tamir, Frank Ong, Joseph Y Cheng, Martin Uecker, and Michael Lustig. Generalized Magnetic Resonance Image Reconstruction using The Berkeley Advanced Reconstruction Toolbox. ISMRM Workshop on Data Sampling and Image Reconstruction, Sedona 2016
- Martin Uecker, Frank Ong, Jonathan I Tamir, Dara Bahri, Patrick Virtue, Joseph Y Cheng, Tao Zhang, and Michael Lustig. Berkeley Advanced Reconstruction Toolbox. Annual Meeting ISMRM, Toronto 2015, In Proc. Intl. Soc. Mag. Reson. Med. 23:2486
- Martin Uecker, Patrick Virtue, Frank Ong, Mark J. Murphy, Marcus T. Alley, Shreyas S. Vasanawala, and Michael Lustig. Software Toolbox and Programming Library for Compressed Sensing and Parallel Imaging. ISMRM Workshop on Data Sampling and Image Reconstruction, Sedona 2013
- Martin Uecker, Peng Lai, Mark J. Murphy, Patrick Virtue, Michael Elad, John M. Pauly, Shreyas S. Vasanawala, and Michael Lustig. ESPIRiT - An Eigenvalue Approach to Autocalibrating Parallel MRI: Where SENSE meets GRAPPA. Magnetic Resonance in Medicine, 71:990-1001 (2014)
Acknowledgements
This work is supported by NIH Grant U24EB029240-01.